R: Calculate mismatch summary

stat_mismatch {ggbio}

R Documentation

Calculate mismatch summary

Description

Calculate mismatch summary

Usage

## for GRanges
## S4 method for signature 'GRanges'
stat_mismatch(data, ..., bsgenome, 
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)
## for BamFile
## S4 method for signature 'BamFile'
stat_mismatch(data, ..., bsgenome, which,
              xlab, ylab, main,
              geom = c("segment", "bar"),
              show.coverage = TRUE)

Arguments

`data`	A `GRanges` or `BamFile` object.
`...`	Extra parameters such as aes() passed to `geom_rect`, `geom_alignment`, or `geom_segment`.
`bsgenome`	`BSgenome` object.
`which`	`GRanges` object to subset the data.
`xlab`	Label for x
`ylab`	Label for y
`main`	Title for plot.
`geom`	The geometric object to use display the data.
`show.coverage`	whether to show coverage as background or not.

Value

A 'Layer'.

Author(s)

Tengfei Yin

[Package ggbio version 1.5.20 ]